Publications

2018


Marios Adamou, Grigoris Antoniou, Elissavet Greasidou, Vincenzo Lagani, Paulos Charonyktakis, Ioannis Tsamardinos, Michael Doyle. Toward Automatic Risk Assessment to Support Suicide Prevention. Crisis, (2018).
@article{marios adamou (2018)toward,
  title={Toward Automatic Risk Assessment to Support Suicide Prevention},
  author={Marios Adamou and Grigoris Antoniou and Elissavet Greasidou and Vincenzo Lagani and Paulos Charonyktakis and Ioannis Tsamardinos and Michael Doyle},
  journal={Crisis},
  year={(2018)}
}

Michail Tsagris, Giorgos Borboudakis, Vincenzo Lagani, Ioannis Tsamardinos. Constraint-based causal discovery with mixed data. International Journal of Data Science and Analytics, (2018).
@article{tsagris(2018)constraint,
  title={Constraint-based causal discovery with mixed data},
  author={Tsagris, Michail and Borboudakis, Giorgos and Lagani, Vincenzo and Tsamardinos, Ioannis},
  journal={International Journal of Data Science and Analytics},
  year={(2018)}
}

Maria Markaki, Ioannis Tsamardinos, Arnulf Langhammer, Vincenzo Lagani, Kristian Hveem, Oluf Dimitri Røe. A Validated Clinical Risk Prediction Model for Lung Cancer in Smokers of All Ages and Exposure Types: A HUNT Study. EBioMedicine, (2018).
@article{markaki(2018)validated,
  title={A Validated Clinical Risk Prediction Model for Lung Cancer in Smokers of All Ages and Exposure Types: A HUNT Study},
  author={Markaki, Maria and Tsamardinos, Ioannis and Langhammer, Arnulf and Lagani, Vincenzo and Hveem, Kristian and Røe, Oluf Dimitri},
  journal={EBioMedicine},
  year={(2018)}
}

Marios Adamou, Grigoris Antoniou, Elissavet Greassidou, Vincenzo Lagani, Paulos Charonyktakis, Ioannis Tsamardinos. Towards Automatic Risk Assessment to Support Suicide Prevention. Accepted to Crisis: The Journal of Crisis Intervention and Suicide Prevention, (2018).
@article{adamou(2018)towards,
  title={Towards Automatic Risk Assessment to Support Suicide Prevention},
  author={Adamou, Marios and Antoniou, Grigoris and Greassidou, Elissavet and Lagani, Vincenzo and Charonyktakis, Paulos and Tsamardinos, Ioannis},
  journal={Accepted to Crisis: The Journal of Crisis Intervention and Suicide Prevention},
  year={(2018)}
}

Marios Adamou, Grigoris Antoniou, Elissavet Greassidou, Vincenzo Lagani, Paulos Charonyktakis, Ioannis Tsamardinos. Mining Free-Text Medical Notes for Suicide Risk Assessment. , (2018).
@article{adamou(2018)mining,
  title={Mining Free-Text Medical Notes for Suicide Risk Assessment},
  author={Adamou, Marios and Antoniou, Grigoris and Greassidou, Elissavet and Lagani, Vincenzo and Charonyktakis, Paulos and Tsamardinos, Ioannis},
  journal={},
  year={(2018)}
}

Kleanthi Lakiotaki, Nikolaos Vorniotakis, Michail Tsagris, Georgios Georgakopoulos, Ioannis Tsamardinos. BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology. Database, (2018).
@article{lakiotaki(2018)biodataome,
  title={BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology},
  author={Lakiotaki, Kleanthi and Vorniotakis, Nikolaos and Tsagris, Michail and Georgakopoulos, Georgios and Tsamardinos, Ioannis},
  journal={Database},
  year={(2018)}
}

Michail Tsagris, Vincenzo Lagani, Ioannis Tsamardinos. Feature selection for high-dimensional temporal data. BMC Bioinformatics, (2018).
@article{tsagris(2018)feature,
  title={Feature selection for high-dimensional temporal data},
  author={Tsagris, Michail and Lagani, Vincenzo and Tsamardinos, Ioannis},
  journal={BMC Bioinformatics},
  year={(2018)}
}

2017


Ioannis Tsamardinos, Elissavet Greasidou, Michalis Tsagris, Giorgos Borboudakis. Bootstrapping the Out-of-sample Predictions for Efficient and Accurate Cross-Validation. , (2017).
@article{tsamardinos(2017)bootstrapping,
  title={Bootstrapping the Out-of-sample Predictions for Efficient and Accurate Cross-Validation},
  author={Tsamardinos, Ioannis and Greasidou, Elissavet and Tsagris, Michalis and Borboudakis, Giorgos},
  journal={},
  year={(2017)}
}

Sofia Triantafillou, Vincenzo Lagani, Christina Heinze-Deml, Angelika Schmidt, Jesper Tegner, Ioannis Tsamardinos. Predicting Causal Relationships from Biological Data: Applying Automated Casual Discovery on Mass Cytometry Data of Human Immune Cells. Scientific Reports. 2017, (2017).
@article{triantafillou(2017)predicting,
  title={Predicting Causal Relationships from Biological Data: Applying Automated Casual Discovery on Mass Cytometry Data of Human Immune Cells},
  author={Triantafillou, Sofia and Lagani, Vincenzo and Heinze-Deml, Christina and Schmidt, Angelika and Tegner, Jesper and Tsamardinos, Ioannis},
  journal={Scientific Reports. 2017},
  year={(2017)}
}

Vincenzo Lagani, Giorgos Athineou, Alessio Farcomeni, Michail Tsagris, Ioannis Tsamardinos. Feature Selection with the R Package MXM: Discovering Multiple, Statistically-Equivalent, Predictive Feature Subsets. Journal of Statistical Software, (2017).
@article{lagani(2017)feature,
  title={Feature Selection with the R Package MXM: Discovering Multiple, Statistically-Equivalent, Predictive Feature Subsets},
  author={Lagani, Vincenzo and Athineou, Giorgos and Farcomeni, Alessio and Tsagris, Michail and Tsamardinos, Ioannis},
  journal={Journal of Statistical Software},
  year={(2017)}
}

Michail Tsagris, Giorgos Borboudakis, Vincenzo Lagani, Ioannis Tsamardinos. Constraint-based Causal Discovery with Mixed Data. , (2017).
@article{tsagris(2017)constraint,
  title={Constraint-based Causal Discovery with Mixed Data},
  author={Tsagris, Michail and Borboudakis, Giorgos and Lagani, Vincenzo and Tsamardinos, Ioannis},
  journal={},
  year={(2017)}
}

Konstantinos Tsirlis, Vincenzo Lagani, Sofia Triantafillou, Ioannis Tsamardinos. On Scoring Maximal Ancestral Graphs with the Max-Min Hill Climbing Algorithm. , (2017).
@article{tsirlis(2017)scoring,
  title={On Scoring Maximal Ancestral Graphs with the Max-Min Hill Climbing Algorithm},
  author={Tsirlis, Konstantinos and Lagani, Vincenzo and Triantafillou, Sofia and Tsamardinos, Ioannis},
  journal={},
  year={(2017)}
}

Georgia Orfanoudaki, Maria Markaki, Katerina Chatzi, Ioannis Tsamardinos, Anastassios Economou. MatureP: prediction of secreted proteins with exclusive information from their mature regions. Scientific Reports, (2017).
@article{orfanoudaki(2017)maturep,
  title={MatureP: prediction of secreted proteins with exclusive information from their mature regions},
  author={Orfanoudaki, Georgia and Markaki, Maria and Chatzi, Katerina and Tsamardinos, Ioannis and Economou, Anastassios},
  journal={Scientific Reports},
  year={(2017)}
}

Georgios Papoutsoglou, Giorgos Athineou, Vincenzo Lagani, Iordanis Xanthopoulos, Angelika Schmidt, Szabolcs Éliás, Jesper Tegnér, Ioannis Tsamardinos. SCENERY: a web application for (causal) network reconstruction from cytometry data. Nucleic Acids Research, (2017).
@article{papoutsoglou(2017)scenery,
  title={SCENERY: a web application for (causal) network reconstruction from cytometry data},
  author={Papoutsoglou, Georgios and Athineou, Giorgos and Lagani, Vincenzo and Xanthopoulos, Iordanis and Schmidt, Angelika and Éliás, Szabolcs and Tegnér, Jesper and Tsamardinos, Ioannis},
  journal={Nucleic Acids Research},
  year={(2017)}
}

Kyros Siomos, E Papadaki, Ioannis Tsamardinos, K Kerkentzes, M Koygioylis, CM Trakatelli. Prothrombotic and Endothelial Inflammatory Markers in Greek Patients with Type 2 Diabetes Compared to Non-Diabetics. Endocrinology & Metabolic Syndrome, (2017).
@article{siomos(2017)prothrombotic,
  title={Prothrombotic and Endothelial Inflammatory Markers in Greek Patients with Type 2 Diabetes Compared to Non-Diabetics},
  author={Siomos, Kyros and Papadaki, E and Tsamardinos, Ioannis and Kerkentzes, K and Koygioylis, M and Trakatelli, CM},
  journal={Endocrinology \& Metabolic Syndrome},
  year={(2017)}
}

2016


Jermaine Goveia, Andreas Pircher, Lena-Christin Conradi, Joanna Kalucka, Vincenzo Lagani, Mieke Dewerchin, Guy Eelen, Ralph J DeBerardinis, Ian D Wilson, Peter Carmeliet. Meta-analysis of clinical metabolic profiling studies in cancer: challenges and opportunities. EMBO Molecular Medicine, (2016).
@article{goveia(2016)meta,
  title={Meta-analysis of clinical metabolic profiling studies in cancer: challenges and opportunities},
  author={Goveia, Jermaine and Pircher, Andreas and Conradi, Lena-Christin and Kalucka, Joanna and Lagani, Vincenzo and Dewerchin, Mieke and Eelen, Guy and DeBerardinis, Ralph J and Wilson, Ian D and Carmeliet, Peter},
  journal={EMBO Molecular Medicine},
  year={(2016)}
}

Giorgos Borboudakis, Ioannis Tsamardinos. Towards Robust and Versatile Causal Discovery forBusiness Applications. , (2016).
@article{borboudakis(2016)towards,
  title={Towards Robust and Versatile Causal Discovery forBusiness Applications},
  author={Borboudakis, Giorgos and Tsamardinos, Ioannis},
  journal={},
  year={(2016)}
}

Paulos Charonyktakis, Maria Plakia, Ioannis Tsamardinos, Maria Papadopouli. On user-centric modular QoE prediction for voip based on machine-learning algorithms. IEEE Transactions on Mobile Computing, (2016).
@article{charonyktakis(2016)user,
  title={On user-centric modular QoE prediction for voip based on machine-learning algorithms},
  author={Charonyktakis, Paulos and Plakia, Maria and Tsamardinos, Ioannis and Papadopouli, Maria},
  journal={IEEE Transactions on Mobile Computing},
  year={(2016)}
}

Sofia Triantafillou, Ioannis Tsamardinos. Score based vs constraint based causal learning in the presence of confounders. , (2016).
@article{triantafillou(2016)score,
  title={Score based vs constraint based causal learning in the presence of confounders},
  author={Triantafillou, Sofia and Tsamardinos, Ioannis},
  journal={},
  year={(2016)}
}

Anna Roumpelaki, Giorgos Borboudakis, Sofia Triantafillou, Ioannis Tsamardinos. Marginal causal consistency in constraint-based causal learning. , (2016).
@article{roumpelaki(2016)marginal,
  title={Marginal causal consistency in constraint-based causal learning},
  author={Roumpelaki, Anna and Borboudakis, Giorgos and Triantafillou, Sofia and Tsamardinos, Ioannis},
  journal={},
  year={(2016)}
}

N Karathanasis, I Tsamardinos, V Lagani. omicsNPC: applying the NonParametric Combination methodology to the integrative analysis of heterogeneous omics data. PloS one, (2016).
@article{karathanasis(2016)omicsnpc,
  title={omicsNPC: applying the NonParametric Combination methodology to the integrative analysis of heterogeneous omics data},
  author={Karathanasis, N and Tsamardinos, I and Lagani, V},
  journal={PloS one},
  year={(2016)}
}

Ana I Robles, St, Karina ahl Olsen, Dana WT Tsui, Vassilis Georgoulias, Jenette Creaney, Katalin Dobra, Mogens Vyberg, Nagahiro Minato, Robert A Anders, Anne‑Lise Borresen‑Dale, Jianwei Zhou, Pål Sætrom, Boye chnack Nielsen, Michaela B Kirschner, Hans E Krokan, Vassiliki Papadimitrakopoulou, Ioannis Tsamardinos, Oluf D Røe. Excerpts from the 1st international NTNU symposium on current and future clinical biomarkers of cancer: innovation and implementation, June 16th and 17th 2016, Trondheim, Norway. Journal of Translational Medicine, (2016).
@article{robles(2016)excerpts,
  title={Excerpts from the 1st international NTNU symposium on current and future clinical biomarkers of cancer: innovation and implementation, June 16th and 17th 2016, Trondheim, Norway},
  author={Robles, Ana I and Standahl Olsen, Karina and Tsui, Dana WT and Georgoulias, Vassilis and Creaney, Jenette and Dobra, Katalin and Vyberg, Mogens and Minato, Nagahiro and Anders, Robert A and Borresen‑Dale, Anne‑Lise and Zhou, Jianwei and Sætrom, Pål and chnack Nielsen, Boye and Kirschner, Michaela B and Krokan, Hans E and Papadimitrakopoulou, Vassiliki and Tsamardinos, Ioannis and Røe, Oluf D},
  journal={Journal of Translational Medicine},
  year={(2016)}
}

Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero, Gilad Silberberg, Ioannis Tsamardinos. A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. BMC Bioinformatics, (2016).
@article{lagani(2016)comparative,
  title={A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions},
  author={Lagani, Vincenzo and Karozou, Argyro D. and Gomez-Cabrero, David and Silberberg, Gilad and Tsamardinos, Ioannis},
  journal={BMC Bioinformatics},
  year={(2016)}
}

D Oluf Roe, Maria Markaki, Robin Mjelle, Pål Sætrom, Ioannis Tsamardinos, Vincenzo Lagani. Serum microRNAs/enriched pathways in lung cancer 1-4 years before diagnosis: A pilot study from the HUNT Biobank, Norway.. , (2016).
@article{roe(2016)serum,
  title={Serum microRNAs/enriched pathways in lung cancer 1-4 years before diagnosis: A pilot study from the HUNT Biobank, Norway.},
  author={Roe, D Oluf and Markaki, Maria and Mjelle, Robin and Sætrom, Pål and Tsamardinos, Ioannis and Lagani, Vincenzo},
  journal={},
  year={(2016)}
}

G. Athineou, G. Papoutsoglou, S. Triantafullou, I Basdekis, V. Lagani, I. Tsamardinos. SCENERY: a Web-Based Application for Network Reconstruction and Visualization of Cytometry Data.. Accepted for publication on the 10th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2016)., (2016).
@article{athineou(2016)scenery,
  title={SCENERY: a Web-Based Application for Network Reconstruction and Visualization of Cytometry Data.},
  author={Athineou, G. and Papoutsoglou, G. and Triantafullou, S. and Basdekis, I and Lagani, V. and Tsamardinos, I.},
  journal={Accepted for publication on the 10th International Conference on Practical Applications of Computational Biology \& Bioinformatics (PACBB 2016).},
  year={(2016)}
}

Vincenzo Lagani, Sofia Triantafillou, Gordon Ball, Jesper Tegner, Ioannis Tsamardinos. Probabilistic computational causal discovery for systems biology. Uncertainty in Biology, (2016).
@article{lagani(2016)probabilistic,
  title={Probabilistic computational causal discovery for systems biology},
  author={Lagani, Vincenzo and Triantafillou, Sofia and Ball, Gordon and Tegner, Jesper and Tsamardinos, Ioannis},
  journal={Uncertainty in Biology},
  year={(2016)}
}

2015


Vincenzo Lagani, Franco Chiarugi, Dimitris Manousos, Vivek Verma, Joanna Fursse, Marias Kostas, Ioannis Tsamardinos. Realization of a service for the long-term risk assessment of diabetes-related complications. Journal of Diabetes and its Complications, (2015).
@article{lagani(2015)realization,
  title={Realization of a service for the long-term risk assessment of diabetes-related complications},
  author={Lagani, Vincenzo and Chiarugi, Franco and Manousos, Dimitris and Verma, Vivek and Fursse, Joanna and Kostas, Marias and Tsamardinos, Ioannis},
  journal={Journal of Diabetes and its Complications},
  year={(2015)}
}

N Karathanasis, I Tsamardinos, P Poirazi. MiRduplexSVM: A high-Performing miRNA-duplex prediction and evaluation methodology. PloS one, (2015).
@article{karathanasis(2015)mirduplexsvm,
  title={MiRduplexSVM: A high-Performing miRNA-duplex prediction and evaluation methodology},
  author={Karathanasis, N and Tsamardinos, I and Poirazi, P},
  journal={PloS one},
  year={(2015)}
}

Vincenzo Lagani, Franco Chiarugi, Shona Thomson, Jo Fursse, Edin Lakasing, Russell W. Jones, Ioannis Tsamardinos. Development and validation of risk assessment models for diabetes-related complications based on the DCCT/EDIC data. Journal of Diabetes and its Complications 2015., (2015).
@article{lagani(2015)development,
  title={Development and validation of risk assessment models for diabetes-related complications based on the DCCT/EDIC data},
  author={Lagani, Vincenzo and Chiarugi, Franco and Thomson, Shona and Fursse, Jo and Lakasing, Edin and Jones, Russell W. and Tsamardinos, Ioannis},
  journal={Journal of Diabetes and its Complications 2015.},
  year={(2015)}
}

G Borboudakis, I Tsamardinos. Bayesian network learning with discrete case-control data. Uncertainty in Artificial Intelligence (UAI), (2015).
@article{borboudakis(2015)bayesian,
  title={Bayesian network learning with discrete case-control data},
  author={Borboudakis, G and Tsamardinos, I},
  journal={Uncertainty in Artificial Intelligence (UAI)},
  year={(2015)}
}

Alex, Anastasios ridis, Giorgos Borboudakis, Athanasios Mouchtaris. Addressing the data-association problem for multiple sound source localization using DOA data estimates. 23rd European Signal Processing Conference (EUSIPCO), (2015).
@article{alex(2015)addressing,
  title={Addressing the data-association problem for multiple sound source localization using DOA data estimates},
  author={Alexandridis, Anastasios and Borboudakis, Giorgos and Mouchtaris, Athanasios},
  journal={23rd European Signal Processing Conference (EUSIPCO)},
  year={(2015)}
}

Ioannis Tsamardinos, Amin Rakhshani, Vincenzo Lagani. Performance-estimation properties of cross-validation based protocols with simultaneous hyper-parameter optimization. International Journal on Artificial Intelligence Tools, (2015).
@article{tsamardinos(2015)performance,
  title={Performance-estimation properties of cross-validation based protocols with simultaneous hyper-parameter optimization},
  author={Tsamardinos, Ioannis and Rakhshani, Amin and Lagani, Vincenzo},
  journal={International Journal on Artificial Intelligence Tools},
  year={(2015)}
}

Ioannis Tsamardinos, Michail Tsagris, Vincenzo Lagani. Feature selection for longitudinal data. Proceedings of the 10th conference of the Hellenic Society for Computational Biology & Bioinformatics (HSCBB15), (2015).
@article{tsamardinos(2015)feature,
  title={Feature selection for longitudinal data},
  author={Tsamardinos, Ioannis and Tsagris, Michail and Lagani, Vincenzo},
  journal={Proceedings of the 10th conference of the Hellenic Society for Computational Biology \& Bioinformatics (HSCBB15)},
  year={(2015)}
}

2014


N Karathanasis, I Tsamardinos, P Poirazi. Don’t use a cannon to kill the miRNA mosquito. Bioinformatics, (2014).
@article{karathanasis(2014)don’t,
  title={Don\’t use a cannon to kill the miRNA mosquito},
  author={Karathanasis, N and Tsamardinos, I and Poirazi, P},
  journal={Bioinformatics},
  year={(2014)}
}

I Tsamardinos, A Rakhshani, V Lagani. Performance-estimation properties of cross-validation-based protocols with simultaneous hyper-parameter optimization. 8th Hellenic Conference on Artificial Intelligence (SETN 2014)., (2014).
@article{tsamardinos(2014)performance,
  title={Performance-estimation properties of cross-validation-based protocols with simultaneous hyper-parameter optimization},
  author={Tsamardinos, I and Rakhshani, A and Lagani, V},
  journal={8th Hellenic Conference on Artificial Intelligence (SETN 2014).},
  year={(2014)}
}

K Kerkentzes, V Lagani, I Tsamardinos, M Vyberg, OD Roe. Hidden treasures in “ancient” microarrays: gene-expression portrays biology and potential resistance pathways of major lung cancer subtypes and normal. , (2014).
@article{kerkentzes(2014)hidden,
  title={Hidden treasures in “ancient” microarrays: gene-expression portrays biology and potential resistance pathways of major lung cancer subtypes and normal},
  author={Kerkentzes, K and Lagani, V and Tsamardinos, I and Vyberg, M and Roe, OD},
  journal={},
  year={(2014)}
}

S Triantafilou, I Tsamardinos, A Roumpelaki. Learning Neighborhoods of High Confidence in Constraint-Based Causal Discovery.. Springer 2014, (2014).
@article{triantafilou(2014)learning,
  title={Learning Neighborhoods of High Confidence in Constraint-Based Causal Discovery.},
  author={Triantafilou, S and Tsamardinos, I and Roumpelaki, A},
  journal={Springer 2014},
  year={(2014)}
}

Grace T. Huang, Ioannis Tsamardinos, Vineet Raghu, Naftali Kaminski, Panayiotis V. Benos. T-ReCS: stable selection of dynamically formed groups of features with application to prediction of clinical outcomes.. Pacific Symposium on Biocomputing (PSB), (2014).
@article{huang(2014)t,
  title={T-ReCS: stable selection of dynamically formed groups of features with application to prediction of clinical outcomes.},
  author={Huang, Grace T. and Tsamardinos, Ioannis and Raghu, Vineet and Kaminski, Naftali and Benos, Panayiotis V.},
  journal={Pacific Symposium on Biocomputing (PSB)},
  year={(2014)}
}

Christina Papagiannopoulou, Grigorios Tsoumakas, Ioannis Tsamardinos. Discovering and Exploiting Entailment Relationships in Multi-Label Learning. ACM SIGKDD Conference on Knowledge Discovery and Data Mining 2015 (KDD), (2014).
@article{papagiannopoulou(2014)discovering,
  title={Discovering and Exploiting Entailment Relationships in Multi-Label Learning},
  author={Papagiannopoulou, Christina and Tsoumakas, Grigorios and Tsamardinos, Ioannis},
  journal={ACM SIGKDD Conference on Knowledge Discovery and Data Mining 2015 (KDD)},
  year={(2014)}
}

Sofia Triantafillou, Ioannis Tsamardinos. Constraint-based Causal Discovery from Multiple Interventions over Overlapping Variable Sets. Journal of Machine Learning Research, (2014).
@article{triantafillou(2014)constraint,
  title={Constraint-based Causal Discovery from Multiple Interventions over Overlapping Variable Sets},
  author={Triantafillou, Sofia and Tsamardinos, Ioannis},
  journal={Journal of Machine Learning Research},
  year={(2014)}
}

2013


Vincenzo Lagani, Lefteris Koumakis, Franco Chiarugi, Edin Lakasing, Ioannis Tsamardinos. A systematic review of predictive risk models for diabetes complications based on large scale clinical studies. Journal of Diabetes and Its Complications, (2013).
@article{lagani(2013)systematic,
  title={A systematic review of predictive risk models for diabetes complications based on large scale clinical studies},
  author={Lagani, Vincenzo and Koumakis, Lefteris and Chiarugi, Franco and Lakasing, Edin and Tsamardinos, Ioannis},
  journal={Journal of Diabetes and Its Complications},
  year={(2013)}
}

Giorgio L Papadopoulos, Elena Karkoulia, Ioannis Tsamardinos, Catherine Porcher, Jiannis Ragoussis, Jorg Bungert, John Strouboulis. GATA-1 genome-wide occupancy associates with distinct epigenetic profiles in mouse fetal liver erythropoiesis. Nucl. Acids Res, (2013).
@article{papadopoulos(2013)gata,
  title={GATA-1 genome-wide occupancy associates with distinct epigenetic profiles in mouse fetal liver erythropoiesis},
  author={Papadopoulos, Giorgio L and Karkoulia, Elena and Tsamardinos, Ioannis and Porcher, Catherine and Ragoussis, Jiannis and Bungert, Jorg and Strouboulis, John},
  journal={Nucl. Acids Res},
  year={(2013)}
}

P. Hunter, T Chapman, PV Coveney, B de Bono, V Diaz, J Fenner, AF Frangi, P Harris, R Hose, P Kohl, P Lawford, K McCormack, M Mendes, S Omholt, A Quarteroni, N Shublaq, J Skar, K Stroetmann, J Tegner, SR Thomas, I Tollis, I Tsamardinos, JHGM van Beek, M. Viceconti. A vision and strategy for the virtual physiological human: 2012 update. Interface Focus, (2013).
@article{hunter(2013)vision,
  title={A vision and strategy for the virtual physiological human: 2012 update},
  author={Hunter, P. and Chapman, T and Coveney, PV and de Bono, B and Diaz, V and Fenner, J and Frangi, AF and Harris, P and Hose, R and Kohl, P and Lawford, P and McCormack, K and Mendes, M and Omholt, S and Quarteroni, A and Shublaq, N and Skar, J and Stroetmann, K and Tegner, J and Thomas, SR and Tollis, I and Tsamardinos, I and van Beek, JHGM and Viceconti, M.},
  journal={Interface Focus},
  year={(2013)}
}

V Lagani, G Kortas, I Tsamardinos. Biomarker signature identification in “omics” data with multi-class outcome. Computational and Structural Biotechnology Journal, 2013, 6(7), (2013).
@article{lagani(2013)biomarker,
  title={Biomarker signature identification in “omics” data with multi-class outcome},
  author={Lagani, V and Kortas, G and Tsamardinos, I},
  journal={Computational and Structural Biotechnology Journal, 2013, 6(7)},
  year={(2013)}
}

N. Karathanasis, I. Tsamardinos, P Poirazi. A bioinformatics approach for investigating the determinants of Drosha processing. 13th IEEE International Conference on Bioinformatics and Bioengineering (IEEE BIBE 2013), (2013).
@article{karathanasis(2013)bioinformatics,
  title={A bioinformatics approach for investigating the determinants of Drosha processing},
  author={Karathanasis, N. and Tsamardinos, I. and Poirazi, P},
  journal={13th IEEE International Conference on Bioinformatics and Bioengineering (IEEE BIBE 2013)},
  year={(2013)}
}

I Karakasilioti, I Kamileri, G. Chatzinikolaou, T. Kosteas, E. Vergadi, A. R. Robinson, I. Tsamardinos, T. A. Rozgaja, S. Siakouli, C. Tsatsanis, L. J. Niedernhofer, G. A. Garinis. DNA damage triggers a chronic autoinflammatory response, leading to fat depletion in NER progeria. Cell Metabolism, (2013).
@article{karakasilioti(2013)dna,
  title={DNA damage triggers a chronic autoinflammatory response, leading to fat depletion in NER progeria},
  author={Karakasilioti, I and Kamileri, I and Chatzinikolaou, G. and Kosteas, T. and Vergadi, E. and Robinson, A. R. and Tsamardinos, I. and Rozgaja, T. A. and Siakouli, S. and Tsatsanis, C. and Niedernhofer, L. J. and Garinis, G. A.},
  journal={Cell Metabolism},
  year={(2013)}
}

2012


I. Tsamardinos, V. Lagani, D. Pappas. Discovering multiple, equivalent biomarker signatures.. proceedings of the 7th conference of the Hellenic Society for Computational Biology {&} Bioinformatics, (2012).
@article{tsamardinos(2012)discovering,
  title={Discovering multiple, equivalent biomarker signatures.},
  author={Tsamardinos, I. and Lagani, V. and Pappas, D.},
  journal={proceedings of the 7th conference of the Hellenic Society for Computational Biology {\&} Bioinformatics},
  year={(2012)}
}

S. Dato, M. Soerensen, A. Montesanto, V. Lagani, G. Passarino, K. Christensen, L. Christiansen. UCP3 polymorphisms, hand grip performance and survival at old age: Association analysis in two Danish middle aged and elderly cohorts. Joint Meeting AGI-SIBV-SIGA, (2012).
@article{dato(2012)ucp3,
  title={UCP3 polymorphisms, hand grip performance and survival at old age: Association analysis in two Danish middle aged and elderly cohorts},
  author={Dato, S. and Soerensen, M. and Montesanto, A. and Lagani, V. and Passarino, G. and Christensen, K. and Christiansen, L.},
  journal={Joint Meeting AGI-SIBV-SIGA},
  year={(2012)}
}

S. Dato, A. Montesanto, V. Lagani, B. Jeune, K. Christensen, G. Passarino. Frailty phenotypes in the elderly based on cluster analysis: a longitudinal study of two Danish cohorts. Evidence for a genetic influence on frailty. Age, (2012).
@article{dato(2012)frailty,
  title={Frailty phenotypes in the elderly based on cluster analysis: a longitudinal study of two Danish cohorts. Evidence for a genetic influence on frailty},
  author={Dato, S. and Montesanto, A. and Lagani, V. and Jeune, B. and Christensen, K. and Passarino, G.},
  journal={Age},
  year={(2012)}
}

G. Borboudakis, S. Triantafillou, I. Tsamardinos. Tools and algorithms for causally interpreting directed edges in maximal ancestral graphs. Sixth European Workshop on Probabilistic Graphical Models, (PGM 2012), (2012).
@article{borboudakis(2012)tools,
  title={Tools and algorithms for causally interpreting directed edges in maximal ancestral graphs},
  author={Borboudakis, G. and Triantafillou, S. and Tsamardinos, I.},
  journal={Sixth European Workshop on Probabilistic Graphical Models, (PGM 2012)},
  year={(2012)}
}

A. P. Armen, I. Tsamardinos, N. Karathanasis, P. Poirazi. SVM-based miRNA: MiRNA∗ duplex prediction. IEEE 12th International Conference on Bioinformatics and Bioengineering, BIBE 2012, (2012).
@article{armen(2012)svm,
  title={SVM-based miRNA: MiRNA∗ duplex prediction},
  author={Armen, A. P. and Tsamardinos, I. and Karathanasis, N. and Poirazi, P.},
  journal={IEEE 12th International Conference on Bioinformatics and Bioengineering, BIBE 2012},
  year={(2012)}
}

V Lagani, I Tsamardinos, S Triantafillou. Learning from Mixture of Experimental Data: A Constraint–Based Approach. Artificial Intelligence: Theories and Applications: 7th Hellenic Conference on AI, (2012).
@article{lagani(2012)learning,
  title={Learning from Mixture of Experimental Data: A Constraint–Based Approach},
  author={Lagani, V and Tsamardinos, I and Triantafillou, S},
  journal={Artificial Intelligence: Theories and Applications: 7th Hellenic Conference on AI},
  year={(2012)}
}

G Borboudakis, I Tsamardinos. Incorporating causal prior knowledge as path-constraints in bayesian networks and maximal ancestral graphs. Proceedings of the 29th International Conference on Machine Learning, ICML 2012, (2012).
@article{borboudakis(2012)incorporating,
  title={Incorporating causal prior knowledge as path-constraints in bayesian networks and maximal ancestral graphs},
  author={Borboudakis, G and Tsamardinos, I},
  journal={Proceedings of the 29th International Conference on Machine Learning, ICML 2012},
  year={(2012)}
}

I. Tsamardinos, G. Borboudakis, E. Christodoulou, O. D. Røe. Chemosensitivity Prediction of Tumours Based on Expression, miRNA, and Proteomics Data. International Journal of Systems Biology and Biomedical Technologies (IJSBBT), (2012).
@article{tsamardinos(2012)chemosensitivity,
  title={Chemosensitivity Prediction of Tumours Based on Expression, miRNA, and Proteomics Data},
  author={Tsamardinos, I. and Borboudakis, G. and Christodoulou, E. and Røe, O. D.},
  journal={International Journal of Systems Biology and Biomedical Technologies (IJSBBT)},
  year={(2012)}
}

L.E. Brown. To feature space and back: Identifying top-weighted features in polynomial support vector machine models. Intelligent Data Analysis, (2012).
@article{brown(2012)feature,
  title={To feature space and back: Identifying top-weighted features in polynomial support vector machine models},
  author={Brown, L.E., Tsamardinos, I., Hardin, D},
  journal={Intelligent Data Analysis},
  year={(2012)}
}

Ioannis Tsamardinos, Sofia Triantafillou, Vincenzo Lagani. Towards integrative causal analysis of heterogeneous data sets and studies. Journal of Machine Learning Research, (2012).
@article{tsamardinos(2012)towards,
  title={Towards integrative causal analysis of heterogeneous data sets and studies},
  author={Tsamardinos, Ioannis and Triantafillou, Sofia and Lagani, Vincenzo},
  journal={Journal of Machine Learning Research},
  year={(2012)}
}

S. Kleisarchaki, D. Kotzinos, I Tsamardinos, V Christophides. A Methodological Framework for Statistical Analysis of Social Text Streams. International Workshop on Information Search, Integration and Personalization (ISIP 2012), (2012).
@article{kleisarchaki(2012)methodological,
  title={A Methodological Framework for Statistical Analysis of Social Text Streams},
  author={Kleisarchaki, S. and Kotzinos, D. and Tsamardinos, I and Christophides, V},
  journal={International Workshop on Information Search, Integration and Personalization (ISIP 2012)},
  year={(2012)}
}

G Borboudakis, I Tsamardinos. Scoring and searching over Bayesian networks with causal and associative priors. Uncertainty in Artificial Intelligence (UAI), (2012).
@article{borboudakis(2012)scoring,
  title={Scoring and searching over Bayesian networks with causal and associative priors},
  author={Borboudakis, G and Tsamardinos, I},
  journal={Uncertainty in Artificial Intelligence (UAI)},
  year={(2012)}
}

2011


I. Tsamardinos, O. D. Roe, V. Lagani. Introducing Integrative Causal Analysis for Co-Analyzing Heterogeneous Studies with an Application to Methylation and Gene Expression Mesothelioma Cancer Data.. 6th Conference of the Hellenic Society for Computational Biology and Bioinformatics (HSCBB11), (2011).
@article{tsamardinos(2011)introducing,
  title={Introducing Integrative Causal Analysis for Co-Analyzing Heterogeneous Studies with an Application to Methylation and Gene Expression Mesothelioma Cancer Data.},
  author={Tsamardinos, I. and Roe, O. D. and Lagani, V.},
  journal={6th Conference of the Hellenic Society for Computational Biology and Bioinformatics (HSCBB11)},
  year={(2011)}
}

Vincenzo Lagani, Ioannis Tsamardinos, Magda Grammatikou, George Garinis. A Genome-Wide Study of the Effect of Aging on Level-2 Gene-Ontology Categories in Mice Using Mixed Models. The 5th International Workshop on Data Mining in Functional Genomics and Proteomics: Current Trends and Future Directions, ECML PKDD 2011, (2011).
@article{lagani(2011)genome,
  title={A Genome-Wide Study of the Effect of Aging on Level-2 Gene-Ontology Categories in Mice Using Mixed Models},
  author={Lagani, Vincenzo and Tsamardinos, Ioannis and Grammatikou, Magda and Garinis, George},
  journal={The 5th International Workshop on Data Mining in Functional Genomics and Proteomics: Current Trends and Future Directions, ECML PKDD 2011},
  year={(2011)}
}

C Filippaki, G Antoniou, I Tsamardinos. Using constraint optimization for conflict resolution and detail control in activity recognition. Second International Joint Conference on Ambient Intelligence 2011, (2011).
@article{filippaki(2011)using,
  title={Using constraint optimization for conflict resolution and detail control in activity recognition},
  author={Filippaki, C and Antoniou, G and Tsamardinos, I},
  journal={Second International Joint Conference on Ambient Intelligence 2011},
  year={(2011)}
}

V. Lagani, V. Kontogiannis, P. Argyropaidas, C. Chronaki. Use of SMS for Tsunami Early Warnings at a Table Top Exercise. 4th ICST International Conference on eHealth (eHealth 2011), (2011).
@article{lagani(2011)use,
  title={Use of SMS for Tsunami Early Warnings at a Table Top Exercise},
  author={Lagani, V. and Kontogiannis, V. and Argyropaidas, P. and Chronaki, C.},
  journal={4th ICST International Conference on eHealth (eHealth 2011)},
  year={(2011)}
}

L. Koumakis, F. Chiarugi, V. Lagani, I Tsamardinos. Risk assessment models for diabetes complications: A survey of available online tools. 2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011), (2011).
@article{koumakis(2011)risk,
  title={Risk assessment models for diabetes complications: A survey of available online tools},
  author={Koumakis, L. and Chiarugi, F. and Lagani, V. and Tsamardinos, I},
  journal={2nd International ICST Conference on Wireless Mobile Communication and Healthcare (MobiHealth 2011)},
  year={(2011)}
}

E. G. Christodoulou, O. D. R{o}e, A. Folarin, I Tsamardinos. Information-Preserving Techniques Improve Chemosensitivity Prediction of Tumours Based on Expression Profiles. 12th Engineering Applications of Neural Networks (EANN) / 7th Artificial Intelligence Applications and Innovations (AIAI) joint conferences, Workshop on Computational Intelligence Applications in Bioinformatics (CIAB 2011), (2011).
@article{christodoulou(2011)information,
  title={Information-Preserving Techniques Improve Chemosensitivity Prediction of Tumours Based on Expression Profiles},
  author={Christodoulou, E. G. and R{o}e, O. D. and Folarin, A. and Tsamardinos, I},
  journal={12th Engineering Applications of Neural Networks (EANN) / 7th Artificial Intelligence Applications and Innovations (AIAI) joint conferences, Workshop on Computational Intelligence Applications in Bioinformatics (CIAB 2011)},
  year={(2011)}
}

AP Armen, I Tsamardinos. A unified approach to estimation and control of the False Discovery Rate in Bayesian network skeleton identification.. Proceedings of the European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning (ESANN), (2011).
@article{armen(2011)unified,
  title={A unified approach to estimation and control of the False Discovery Rate in Bayesian network skeleton identification.},
  author={Armen, AP and Tsamardinos, I},
  journal={Proceedings of the European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning (ESANN)},
  year={(2011)}
}

G Borboudakis, S Triantafilou, V Lagani, I Tsamardinos. A constraint-based approach to incorporate prior knowledge in causal models.. Proceedings of the European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning (ESANN), (2011).
@article{borboudakis(2011)constraint,
  title={A constraint-based approach to incorporate prior knowledge in causal models.},
  author={Borboudakis, G and Triantafilou, S and Lagani, V and Tsamardinos, I},
  journal={Proceedings of the European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning (ESANN)},
  year={(2011)}
}

2010


C.F. Aliferis, A.R. Statnikov, I. Tsamardinos, S. Mani, X.D. Koutsoukos. Local causal and markov blanket induction for causal discovery and feature selection for classification part ii: Analysis and extensions. The Journal of Machine Learning Research, (2010).
@article{aliferis(2010)local,
  title={Local causal and markov blanket induction for causal discovery and feature selection for classification part ii: Analysis and extensions},
  author={Aliferis, C.F. and Statnikov, A.R. and Tsamardinos, I. and Mani, S. and Koutsoukos, X.D.},
  journal={The Journal of Machine Learning Research},
  year={(2010)}
}

C.F. Aliferis, A.R. Statnikov, I. Tsamardinos, S. Mani, X.D. Koutsoukos. Local causal and markov blanket induction for causal discovery and feature selection for classification part i: Analysis and extensions. The Journal of Machine Learning Research, (2010).
@article{aliferis(2010)local,
  title={Local causal and markov blanket induction for causal discovery and feature selection for classification part i: Analysis and extensions},
  author={Aliferis, C.F. and Statnikov, A.R. and Tsamardinos, I. and Mani, S. and Koutsoukos, X.D.},
  journal={The Journal of Machine Learning Research},
  year={(2010)}
}

F. Chiarugi, D. Emmanouilidou, I. Tsamardinos. The morphological classification of heartbeats as dominant and non-dominant in ECG signals. Physiological Measurement, (2010).
@article{chiarugi(2010)morphological,
  title={The morphological classification of heartbeats as dominant and non-dominant in ECG signals},
  author={Chiarugi, F. and Emmanouilidou, D. and Tsamardinos, I.},
  journal={Physiological Measurement},
  year={(2010)}
}

P. Hunter, P.V. Coveney, B. de Bono, V. Diaz, J. Fenner, A.F. Frangi, P. Harris, R. Hose, P. Kohl, P. Lawford, K. McCormack, M. Mendes, S. Omholt, A. Quarteroni, J. Skar, J. Tegner, R, S.Th. all, I.G. Tollis, I. Tsamardinos, M. van Beek. A vision and strategy for the virtual physiological human in 2010 and beyond. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, (2010).
@article{hunter(2010)vision,
  title={A vision and strategy for the virtual physiological human in 2010 and beyond},
  author={Hunter, P. and Coveney, P.V. and de Bono, B. and Diaz, V. and Fenner, J. and Frangi, A.F. and Harris, P. and Hose, R. and Kohl, P. and Lawford, P. and McCormack, K. and Mendes, M. and Omholt, S. and Quarteroni, A. and Skar, J. and Tegner, J. and Randall, S.Th. and Tollis, I.G. and Tsamardinos, I. and van Beek, M.},
  journal={Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
  year={(2010)}
}

K Gkirtzou, I Tsamardinos, P Tsakalides, P Poirazi. MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors. PloS one, (2010).
@article{gkirtzou(2010)maturebayes,
  title={MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors},
  author={Gkirtzou, K and Tsamardinos, I and Tsakalides, P and Poirazi, P},
  journal={PloS one},
  year={(2010)}
}

V Lagani, I Tsamardinos. Structure-based variable selection for survival data. Bioinformatics, (2010).
@article{lagani(2010)structure,
  title={Structure-based variable selection for survival data},
  author={Lagani, V and Tsamardinos, I},
  journal={Bioinformatics},
  year={(2010)}
}

I Tsamardinos, G Borboudakis. Permutation testing improves Bayesian network learning. Proceedings of the 2010 European Conference on Machine Learning and Knowledge Discovery in Databases: Part III, (2010).
@article{tsamardinos(2010)permutation,
  title={Permutation testing improves Bayesian network learning},
  author={Tsamardinos, I and Borboudakis, G},
  journal={Proceedings of the 2010 European Conference on Machine Learning and Knowledge Discovery in Databases: Part III},
  year={(2010)}
}

S. Triantafullou, I. Tsamardinos, I.G. Tollis. Learning causal structure from overlapping variable sets. Proceedings of The Thirteenth International Conference on Artificial Intelligence and Statistics (AISTATS), (2010).
@article{triantafullou(2010)learning,
  title={Learning causal structure from overlapping variable sets},
  author={Triantafullou, S. and Tsamardinos, I. and Tollis, I.G.},
  journal={Proceedings of The Thirteenth International Conference on Artificial Intelligence and Statistics (AISTATS)},
  year={(2010)}
}

2009


I Tsamardinos, S Triantafillou. The possibility of integrative causal analysis: Learning from different datasets and studies. Journal of Engineering Intelligent Systems, (2009).
@article{tsamardinos(2009)possibility,
  title={The possibility of integrative causal analysis: Learning from different datasets and studies},
  author={Tsamardinos, I and Triantafillou, S},
  journal={Journal of Engineering Intelligent Systems},
  year={(2009)}
}

I Tsamardinos, AP Mariglis. Multi-source causal analysis: Learning Bayesian networks from multiple datasets. Artificial Intelligence Applications and Innovations III, Proceedings of the 5TH IFIP Conference on Artificial Intelligence Applications and Innovations, (2009).
@article{tsamardinos(2009)multi,
  title={Multi-source causal analysis: Learning Bayesian networks from multiple datasets},
  author={Tsamardinos, I and Mariglis, AP},
  journal={Artificial Intelligence Applications and Innovations III, Proceedings of the 5TH IFIP Conference on Artificial Intelligence Applications and Innovations},
  year={(2009)}
}

C.F. Aliferis, A.R. Statnikov, I. Tsamardinos, J.S. Schildcrout, B.E. Shepherd, Jr F.E. Harrell. Factors influencing the statistical power of complex data analysis protocols for molecular signature development from microarray data. PloS one, (2009).
@article{aliferis(2009)factors,
  title={Factors influencing the statistical power of complex data analysis protocols for molecular signature development from microarray data},
  author={Aliferis, C.F. and Statnikov, A.R. and Tsamardinos, I. and Schildcrout, J.S. and Shepherd, B.E. and Harrell, Jr F.E.},
  journal={PloS one},
  year={(2009)}
}

2008


F. Chiarugi, D. Emmanouilidou, I. Tsamardinos, I.G Tollis. Morphological classification of heartbeats using similarity features and a two-phase decision tree. Computers in Cardiology, (2008).
@article{chiarugi(2008)morphological,
  title={Morphological classification of heartbeats using similarity features and a two-phase decision tree},
  author={Chiarugi, F. and Emmanouilidou, D. and Tsamardinos, I. and Tollis, I.G},
  journal={Computers in Cardiology},
  year={(2008)}
}

I Tsamardinos, LE Brown. Bounding the False Discovery Rate in Local Bayesian Network Learning.. Proceedings of the Twenty-Third AAAI Conference on Artificial Intelligence, (2008).
@article{tsamardinos(2008)bounding,
  title={Bounding the False Discovery Rate in Local Bayesian Network Learning.},
  author={Tsamardinos, I and Brown, LE},
  journal={Proceedings of the Twenty-Third AAAI Conference on Artificial Intelligence},
  year={(2008)}
}

LE Brown, I Tsamardinos. A Strategy for Making Predictions Under Manipulation.. In JMLR: Workshop and Conference Proceedings, (2008).
@article{brown(2008)strategy,
  title={A Strategy for Making Predictions Under Manipulation.},
  author={Brown, LE and Tsamardinos, I},
  journal={In JMLR: Workshop and Conference Proceedings},
  year={(2008)}
}

2006


I Tsamardinos, LE Brown, CF Aliferis. The max-min hill-climbing Bayesian network structure learning algorithm. Machine learning, (2006).
@article{tsamardinos(2006)max,
  title={The max-min hill-climbing Bayesian network structure learning algorithm},
  author={Tsamardinos, I and Brown, LE and Aliferis, CF},
  journal={Machine learning},
  year={(2006)}
}

I Tsamardinos, AR Statnikov, LE Brown, CF Aliferis. Generating Realistic Large Bayesian Networks by Tiling.. In The 19th International FLAIRS Conference, (2006).
@article{tsamardinos(2006)generating,
  title={Generating Realistic Large Bayesian Networks by Tiling.},
  author={Tsamardinos, I and Statnikov, AR and Brown, LE and Aliferis, CF},
  journal={In The 19th International FLAIRS Conference},
  year={(2006)}
}

CF Aliferis, A Statnikov, I Tsamardinos. Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective. Cancer Informatics, (2006).
@article{aliferis(2006)challenges,
  title={Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective},
  author={Aliferis, CF and Statnikov, A and Tsamardinos, I},
  journal={Cancer Informatics},
  year={(2006)}
}

2005


ME Pollack, I Tsamardinos. Efficiently dispatching plans encoded as simple temporal problems. Intelligent Techniques for Planning, (2005).
@article{pollack(2005)efficiently,
  title={Efficiently dispatching plans encoded as simple temporal problems},
  author={Pollack, ME and Tsamardinos, I},
  journal={Intelligent Techniques for Planning},
  year={(2005)}
}

A. Statnikov, C. F. Aliferis, I. Tsamardinos, D. Hardin, S Levy. A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis. Bioinformatics, (2005).
@article{statnikov(2005)comprehensive,
  title={A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis},
  author={Statnikov, A. and Aliferis, C. F. and Tsamardinos, I. and Hardin, D. and Levy, S},
  journal={Bioinformatics},
  year={(2005)}
}

Y. Aphinyanaphongs, I. Tsamardinos, A. Statnikov, D. Hardin, C. F Aliferis. Text categorization models for high-quality article retrieval in internal medicine. Journal of the American Medical Informatics Association, (2005).
@article{aphinyanaphongs(2005)text,
  title={Text categorization models for high-quality article retrieval in internal medicine},
  author={Aphinyanaphongs, Y. and Tsamardinos, I. and Statnikov, A. and Hardin, D. and Aliferis, C. F},
  journal={Journal of the American Medical Informatics Association},
  year={(2005)}
}

LE Brown, I Tsamardinos, CF Aliferis. A comparison of novel and state-of-the-art polynomial Bayesian network learning algorithms. In Proceedings of the national conference on artificial intelligence, (2005).
@article{brown(2005)comparison,
  title={A comparison of novel and state-of-the-art polynomial Bayesian network learning algorithms},
  author={Brown, LE and Tsamardinos, I and Aliferis, CF},
  journal={In Proceedings of the national conference on artificial intelligence},
  year={(2005)}
}

A. Statnikov, I. Tsamardinos, Y. Dosbayev, C. F Aliferis. GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data. International journal of medical informatics, (2005).
@article{statnikov(2005)gems,
  title={GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data},
  author={Statnikov, A. and Tsamardinos, I. and Dosbayev, Y. and Aliferis, C. F},
  journal={International journal of medical informatics},
  year={(2005)}
}

2004


A Statnikov, CF Aliferis, I Tsamardinos. Methods for multi-category cancer diagnosis from gene expression data: a comprehensive evaluation to inform decision support system development. in Proceedings of the 11th World Congress in Medical Informatics (MEDINFO ’04), (2004).
@article{statnikov(2004)methods,
  title={Methods for multi-category cancer diagnosis from gene expression data: a comprehensive evaluation to inform decision support system development},
  author={Statnikov, A and Aliferis, CF and Tsamardinos, I},
  journal={in Proceedings of the 11th World Congress in Medical Informatics (MEDINFO \’04)},
  year={(2004)}
}

LE Brown, I Tsamardinos, CF Aliferis. A novel algorithm for scalable and accurate Bayesian network learning. in Proceedings of 11th World Congress in Medical Informatics (MEDINFO ’04), (2004).
@article{brown(2004)novel,
  title={A novel algorithm for scalable and accurate Bayesian network learning},
  author={Brown, LE and Tsamardinos, I and Aliferis, CF},
  journal={in Proceedings of 11th World Congress in Medical Informatics (MEDINFO \’04)},
  year={(2004)}
}

D Hardin, I Tsamardinos, CF Aliferis. A theoretical characterization of linear SVM-based feature selection. The Twenty-First International Conference on Machine Learning (ICML 2004), (2004).
@article{hardin(2004)theoretical,
  title={A theoretical characterization of linear SVM-based feature selection},
  author={Hardin, D and Tsamardinos, I and Aliferis, CF},
  journal={The Twenty-First International Conference on Machine Learning (ICML 2004)},
  year={(2004)}
}

2003


I Tsamardinos, CF Aliferis. Towards Principled Feature Selection: Relevancy, Filters and Wrappers.. , (2003).
@article{tsamardinos(2003)towards,
  title={Towards Principled Feature Selection: Relevancy, Filters and Wrappers.},
  author={Tsamardinos, I and Aliferis, CF},
  journal={},
  year={(2003)}
}

I Tsamardinos, CF Aliferis, AR Statnikov, E Statnikov. Algorithms for Large Scale Markov Blanket Discovery.. FLAIRS conference, (2003).
@article{tsamardinos(2003)algorithms,
  title={Algorithms for Large Scale Markov Blanket Discovery.},
  author={Tsamardinos, I and Aliferis, CF and Statnikov, AR and Statnikov, E},
  journal={FLAIRS conference},
  year={(2003)}
}

C. F. Aliferis, I. Tsamardinos, P. Massion, A. Statnikov, D. Hardin. Why Classification Models Using Array Gene Expression Data Perform So Well: A Preliminary Investigation of Explanatory Factors.. International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences (METMBS ’03), (2003).
@article{aliferis(2003)classification,
  title={Why Classification Models Using Array Gene Expression Data Perform So Well: A Preliminary Investigation of Explanatory Factors.},
  author={Aliferis, C. F. and Tsamardinos, I. and Massion, P. and Statnikov, A. and Hardin, D.},
  journal={International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences (METMBS \’03)},
  year={(2003)}
}

CF Aliferis, I Tsamardinos, AR Statnikov, LE Brown. Causal Explorer: A Causal Probabilistic Network Learning Toolkit for Biomedical Discovery.. International Conference on Mathematics and Engineering Techniques in Medicine and Biolog-ical Sciences (METMBS ’03), (2003).
@article{aliferis(2003)causal,
  title={Causal Explorer: A Causal Probabilistic Network Learning Toolkit for Biomedical Discovery.},
  author={Aliferis, CF and Tsamardinos, I and Statnikov, AR and Brown, LE},
  journal={International Conference on Mathematics and Engineering Techniques in Medicine and Biolog-ical Sciences (METMBS \’03)},
  year={(2003)}
}

I Tsamardinos, T Vidal, ME Pollack. CTP: A new constraint-based formalism for conditional, temporal planning. Special Issue on Planning of Constraints Journal, (2003).
@article{tsamardinos(2003)ctp,
  title={CTP: A new constraint-based formalism for conditional, temporal planning},
  author={Tsamardinos, I and Vidal, T and Pollack, ME},
  journal={Special Issue on Planning of Constraints Journal},
  year={(2003)}
}

I Tsamardinos, ME Pollack. Efficient solution techniques for disjunctive temporal reasoning problems. Artificial Intelligence, (2003).
@article{tsamardinos(2003)efficient,
  title={Efficient solution techniques for disjunctive temporal reasoning problems},
  author={Tsamardinos, I and Pollack, ME},
  journal={Artificial Intelligence},
  year={(2003)}
}

M. E. Pollack, L. Brown, D. Colbry, C. E. McCarthy, C. Orosz, B. Peintner, S Ramakrishnan, I. Tsamardinos. Autominder: An intelligent cognitive orthotic system for people with memory impairment. Robotics and Autonomous Systems, (2003).
@article{pollack(2003)autominder,
  title={Autominder: An intelligent cognitive orthotic system for people with memory impairment},
  author={Pollack, M. E. and Brown, L. and Colbry, D. and McCarthy, C. E. and Orosz, C. and Peintner, B. and Ramakrishnan, S and Tsamardinos, I.},
  journal={Robotics and Autonomous Systems},
  year={(2003)}
}

I. Tsamardinos, M. E. Pollack, S. Ramakrishnan. Assessing the probability of legal execution of plans with temporal uncertainty. ICAPS03 Workshop on Planning under Un-certainty and Incomplete Information, (2003).
@article{tsamardinos(2003)assessing,
  title={Assessing the probability of legal execution of plans with temporal uncertainty},
  author={Tsamardinos, I. and Pollack, M. E. and Ramakrishnan, S.},
  journal={ICAPS03 Workshop on Planning under Un-certainty and Incomplete Information},
  year={(2003)}
}

I Tsamardinos, CF Aliferis, A Statnikov. Time and sample efficient discovery of Markov blankets and direct causal relations. The Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 2003), (2003).
@article{tsamardinos(2003)time,
  title={Time and sample efficient discovery of Markov blankets and direct causal relations},
  author={Tsamardinos, I and Aliferis, CF and Statnikov, A},
  journal={The Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 2003)},
  year={(2003)}
}

Constantin F. Aliferis, Ioannis Tsamardinos, Alex Statnikov, er. HITON: a novel Markov Blanket algorithm for optimal variable selection. the American Medical Informatics Association meeting 2003 (AMIA 2003), (2003).
@article{aliferis(2003)hiton,
  title={HITON: a novel Markov Blanket algorithm for optimal variable selection},
  author={Aliferis, Constantin F. and Tsamardinos, Ioannis and Statnikov, Alexander},
  journal={the American Medical Informatics Association meeting 2003 (AMIA 2003)},
  year={(2003)}
}

Lewis Frey, Douglas Fisher, Ioannis Tsamardinos, Constantin F. Aliferis, Alex Statnikov, er. Identifying Markov blankets with decision tree induction. The Third IEEE International Conference on Data Mining (ICDM’03), (2003).
@article{frey(2003)identifying,
  title={Identifying Markov blankets with decision tree induction},
  author={Frey, Lewis and Fisher, Douglas and Tsamardinos, Ioannis and Aliferis, Constantin F. and Statnikov, Alexander},
  journal={The Third IEEE International Conference on Data Mining (ICDM\’03)},
  year={(2003)}
}

2002


Constantin F. Aliferis, Ioannis Tsamardinos, Pierre Mansion, Alex Statnikov, er, Douglas Hardin. Machine learning models for lung cancer classification using array comparative genomic hybridization.. 16th International FLAIRS Conference, (2002).
@article{aliferis(2002)machine,
  title={Machine learning models for lung cancer classification using array comparative genomic hybridization.},
  author={Aliferis, Constantin F. and Tsamardinos, Ioannis and Mansion, Pierre and Statnikov, Alexander and Hardin, Douglas},
  journal={16th International FLAIRS Conference},
  year={(2002)}
}

Alan Berfield, Panos K. Chrysanthis, Ioannis Tsamardinos, Martha E. Pollack, Sujata Banerjee. A scheme for integrating e-services in establishing virtual enterprises. 12th International Workshop on Research Issues on Data Engineering (RIDE-02), (2002).
@article{berfield(2002)scheme,
  title={A scheme for integrating e-services in establishing virtual enterprises},
  author={Berfield, Alan and Chrysanthis, Panos K. and Tsamardinos, Ioannis and Pollack, Martha E. and Banerjee, Sujata},
  journal={12th International Workshop on Research Issues on Data Engineering (RIDE-02)},
  year={(2002)}
}

M. E. Pollack, C. E . McCarthy, S. Ramakrishnan, I. Tsamardinos, L. Brown, S. Carrion, D. Colbry, C. Orosz, B. Peintner. Autominder: A planning, monitoring, and reminding assistive agent. Proceedings of the 7th International Conference on Intelligent Autonomous Systems (IAS), (2002).
@article{pollack(2002)autominder,
  title={Autominder: A planning, monitoring, and reminding assistive agent},
  author={Pollack, M. E. and McCarthy, C. E . and Ramakrishnan, S. and Tsamardinos, I. and Brown, L. and Carrion, S. and Colbry, D. and Orosz, C. and Peintner, B.},
  journal={Proceedings of the 7th International Conference on Intelligent Autonomous Systems (IAS)},
  year={(2002)}
}

Martha E. Pollack, Colleen E. McCarthy, Sailesh Ramakrishnan, Ioannis Tsamardinos. Execution-time plan management for a cognitive orthotic system. Plan-Based Control of Robotic Agents, (2002).
@article{pollack(2002)execution,
  title={Execution-time plan management for a cognitive orthotic system},
  author={Pollack, Martha E. and McCarthy, Colleen E. and Ramakrishnan, Sailesh and Tsamardinos, Ioannis},
  journal={Plan-Based Control of Robotic Agents},
  year={(2002)}
}

I Tsamardinos. A probabilistic approach to robust execution of temporal plans with uncertainty. Proceedings of the 2nd Greek National Conference on Artificial Intelligence, (2002).
@article{tsamardinos(2002)probabilistic,
  title={A probabilistic approach to robust execution of temporal plans with uncertainty},
  author={Tsamardinos, I},
  journal={Proceedings of the 2nd Greek National Conference on Artificial Intelligence},
  year={(2002)}
}

2001


I Tsamardinos, ME Pollack, P Ganchev. Flexible dispatch of disjunctive plans. Proceedings of Sixth European Conference on Planning 2001 (ECP-01), (2001).
@article{tsamardinos(2001)flexible,
  title={Flexible dispatch of disjunctive plans},
  author={Tsamardinos, I and Pollack, ME and Ganchev, P},
  journal={Proceedings of Sixth European Conference on Planning 2001 (ECP-01)},
  year={(2001)}
}

2000


I Tsamardinos, ME Pollack, JF Horty. Merging Plans with Quantitative Temporal Constraints, Temporally Extended Actions, and Conditional Branches.. Proceedings of the 5th International Conference on AI Planning and Scheduling (AIPS 2000), Breckenridge, CO, April, 2000, (2000).
@article{tsamardinos(2000)merging,
  title={Merging Plans with Quantitative Temporal Constraints, Temporally Extended Actions, and Conditional Branches.},
  author={Tsamardinos, I and Pollack, ME and Horty, JF},
  journal={Proceedings of the 5th International Conference on AI Planning and Scheduling (AIPS 2000), Breckenridge, CO, April, 2000},
  year={(2000)}
}

1999


ME Pollack, I Tsamardinos, JF Horty. Adjustable autonomy for a plan management agent. Proceedings of the 1999 AAAI Spring Symposium on Adjustable Autonomy, (1999).
@article{pollack(1999)adjustable,
  title={Adjustable autonomy for a plan management agent},
  author={Pollack, ME and Tsamardinos, I and Horty, JF},
  journal={Proceedings of the 1999 AAAI Spring Symposium on Adjustable Autonomy},
  year={(1999)}
}

1998


C. Bicchieri, M. Pollack, C. Rovelli, I. Tsamardinos. The Potential for the Evolution of Co-operatin. International Journal of Computer-Human Systems, (1998).
@article{bicchieri(1998)potential,
  title={The Potential for the Evolution of Co-operatin},
  author={Bicchieri, C. and Pollack, M. and Rovelli, C. and Tsamardinos, I.},
  journal={International Journal of Computer-Human Systems},
  year={(1998)}
}

N Muscettola, P Morris, I Tsamardinos. Reformulating temporal plans for efficient execution. Proceedings of the 6th Conference Principles of Knowledge Represen-tation and Reasoning (KR), (1998).
@article{muscettola(1998)reformulating,
  title={Reformulating temporal plans for efficient execution},
  author={Muscettola, N and Morris, P and Tsamardinos, I},
  journal={Proceedings of the 6th Conference Principles of Knowledge Represen-tation and Reasoning (KR)},
  year={(1998)}
}

I Tsamardinos, N Muscettola, P Morris. Fast transformation of temporal plans for efficient execution. Proceedings of the 15th National Conference on Artificial Intelli-gence (AAAI’98), (1998).
@article{tsamardinos(1998)fast,
  title={Fast transformation of temporal plans for efficient execution},
  author={Tsamardinos, I and Muscettola, N and Morris, P},
  journal={Proceedings of the 15th National Conference on Artificial Intelli-gence (AAAI\’98)},
  year={(1998)}
}

1995


S. Orphanoudakis, M. Tsiknakis, C. Chronaki, S. Kostomanolakis, M. Zikos, I Tsamardinos. Development of an Integrated Image Management and Communication System on Crete. Proceedings of Computed Aided Radiology ’95, (1995).
@article{orphanoudakis(1995)development,
  title={Development of an Integrated Image Management and Communication System on Crete},
  author={Orphanoudakis, S. and Tsiknakis, M. and Chronaki, C. and Kostomanolakis, S. and Zikos, M. and Tsamardinos, I},
  journal={Proceedings of Computed Aided Radiology \’95},
  year={(1995)}
}